Mercurial > repos > iuc > onto_tk_get_relationship_types
view get_relationship_types.xml @ 0:c5b1acc3c42c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:32:28 -0500 |
parents | |
children | a6c8e5934ed2 |
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<tool id="onto_tk_get_relationship_types" name="Get all the relationship types" version="@VERSION@.0"> <description>from the given OBO ontology</description> <macros> <import>onto_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="aggressive"> get_relationship_types.pl -f '$input' | sort > '$output' </command> <inputs> <expand macro="input_ontology" /> </inputs> <outputs> <data format="tabular" name="output" label="Relationship types of ${on_string}"> <actions> <action name="column_names" type="metadata" default="relationship type" /> </actions> </data> </outputs> <tests> <test> <param name="input" value="pre_cco_core.obo"/> <output name="output" file="relationship_types.tab"/> </test> </tests> <help> .. class:: infomark Collects all the names of the relationship_types in a given ontology. **Example** If you ask for the relationships of the Gene Ontology, you will get:: is_a part_of regulates has_part negatively_regulates positively_regulates </help> <expand macro="citations" /> </tool>