Mercurial > repos > iuc > onto_tk_get_root_terms

annotate test-data/lowest_common_ancestor.tab @ 0:fc4edae65b37 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author iuc
date Fri, 10 Nov 2017 11:34:52 -0500
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fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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1
fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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2 description: Get the lowest common ancestor (LCA) of two terms in a given OBO ontology.
fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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3 usage : get_lowest_common_ancestor.pl [options]
fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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4 options :
fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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5 -f OBO input file
fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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6 -a term 1 ID
fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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7 -b term 2 ID
fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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8 example:
fc4edae65b37 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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9 perl get_lowest_common_ancestor.pl -f go.obo -t GO:0000234 -t GO:0000111