Mercurial > repos > iuc > onto_tk_obo2owl
comparison obo2owl.xml @ 0:54d363d435f0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
| author | iuc |
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| date | Fri, 10 Nov 2017 11:31:25 -0500 |
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| children |
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| -1:000000000000 | 0:54d363d435f0 |
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| 1 <tool id="onto_tk_obo2owl" name="Convert OBO to OWL" version="@VERSION@.0"> | |
| 2 <description></description> | |
| 3 <macros> | |
| 4 <import>onto_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command detect_errors="aggressive"> | |
| 8 obo2owl.pl | |
| 9 -f '$input' | |
| 10 -u '$url' | |
| 11 -w '$oboinowlurl' > '$output' | |
| 12 </command> | |
| 13 <inputs> | |
| 14 <expand macro="input_ontology" /> | |
| 15 <param name="url" type="text" value="http://" label="URL"> | |
| 16 <expand macro="sanitize_urls" /> | |
| 17 </param> | |
| 18 <param name="oboinowlurl" type="text" value="http://" label="OBOinOWL URL"> | |
| 19 <expand macro="sanitize_urls" /> | |
| 20 </param> | |
| 21 </inputs> | |
| 22 <outputs> | |
| 23 <data format="owl" name="output" /> | |
| 24 </outputs> | |
| 25 <tests> | |
| 26 <test> | |
| 27 <param name="input" value="pre_cco_core.obo"/> | |
| 28 <output name="output" file="pre_cco_core.owl" lines_diff="2" /> | |
| 29 </test> | |
| 30 </tests> | |
| 31 <help> | |
| 32 This tool transforms an OBO formatted ontology (such as the Gene Ontology) to OWL. | |
| 33 | |
| 34 </help> | |
| 35 <expand macro="citations" /> | |
| 36 </tool> | |
| 37 |