Mercurial > repos > iuc > onto_tk_obo2owl

diff obo2owl.xml @ 0:54d363d435f0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author: iuc
date: Fri, 10 Nov 2017 11:31:25 -0500
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/obo2owl.xml	Fri Nov 10 11:31:25 2017 -0500
@@ -0,0 +1,37 @@
+<tool id="onto_tk_obo2owl" name="Convert OBO to OWL" version="@VERSION@.0">
+    <description></description>
+    <macros>
+        <import>onto_macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="aggressive">
+    obo2owl.pl
+        -f '$input'
+        -u '$url'
+        -w '$oboinowlurl' > '$output'
+    </command>
+    <inputs>
+        <expand macro="input_ontology" />
+        <param name="url" type="text" value="http://" label="URL">
+            <expand macro="sanitize_urls" />
+        </param>
+        <param name="oboinowlurl" type="text" value="http://" label="OBOinOWL URL">
+            <expand macro="sanitize_urls" />
+        </param>
+    </inputs>
+    <outputs>
+        <data format="owl" name="output" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="pre_cco_core.obo"/>
+            <output name="output" file="pre_cco_core.owl" lines_diff="2" />
+        </test>
+    </tests>
+    <help>
+This tool transforms an OBO formatted ontology (such as the Gene Ontology) to OWL.
+
+    </help>
+    <expand macro="citations" />
+</tool>
+