view test-data/results_fromblast/Statistics_Overall.tsv @ 9:b3d25fae5389 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 179e3fd2aeb66484e49e6370e9507e24d118f4ea
author iuc
date Mon, 15 Jan 2024 10:18:14 +0000
parents 974d8c28e586
children
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Number of species	4
Number of genes	2733
Number of genes in orthogroups	2276
Number of unassigned genes	457
Percentage of genes in orthogroups	83.3
Percentage of unassigned genes	16.7
Number of orthogroups	622
Number of species-specific orthogroups	96
Number of genes in species-specific orthogroups	426
Percentage of genes in species-specific orthogroups	15.6
Mean orthogroup size	3.7
Median orthogroup size	4.0
G50 (assigned genes)	4
G50 (all genes)	4
O50 (assigned genes)	221
O50 (all genes)	278
Number of orthogroups with all species present	278
Number of single-copy orthogroups	249
Date	2020-08-14
Orthogroups file	Orthogroups.tsv
Unassigned genes file	Orthogroups_UnassignedGenes.tsv
Per-species statistics	Statistics_PerSpecies.tsv
Overall statistics	Statistics_Overall.tsv
Orthogroups shared between species	Orthogroups_SpeciesOverlaps.tsv

Average number of genes per-species in orthogroup	Number of orthogroups	Percentage of orthogroups	Number of genes	Percentage of genes
<1	285	45.8	672	29.5
'1	322	51.8	1352	59.4
'2	8	1.3	73	3.2
'3	4	0.6	56	2.5
'4	0	0.0	0	0.0
'5	0	0.0	0	0.0
'6	1	0.2	26	1.1
'7	0	0.0	0	0.0
'8	0	0.0	0	0.0
'9	1	0.2	39	1.7
'10	0	0.0	0	0.0
11-15	1	0.2	58	2.5
16-20	0	0.0	0	0.0
21-50	0	0.0	0	0.0
51-100	0	0.0	0	0.0
101-150	0	0.0	0	0.0
151-200	0	0.0	0	0.0
201-500	0	0.0	0	0.0
501-1000	0	0.0	0	0.0
'1001+	0	0.0	0	0.0

Number of species in orthogroup	Number of orthogroups
1	96
2	173
3	75
4	278