Mercurial > repos > iuc > package_augustus_3_1

annotate tool_dependencies.xml @ 2:71bb72c60987 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:07:06 -0400
parents 5f78108125fd
children 24009970003a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
2 <tool_dependency>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
3 <package name="augustus" version="3.1">
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
4 <install version="1.0">
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
5 <actions>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.1.tar.gz</action>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
7 <action type="shell_command">make</action>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
8 <action type="move_directory_files">
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
9 <source_directory>bin</source_directory>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
11 </action>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
12 <action type="move_directory_files">
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
13 <source_directory>scripts</source_directory>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
14 <destination_directory>$INSTALL_DIR/scripts</destination_directory>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
15 </action>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
16 <action type="move_directory_files">
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
17 <source_directory>config</source_directory>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
18 <destination_directory>$INSTALL_DIR/config</destination_directory>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
19 </action>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
20 <action type="set_environment">
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
2
71bb72c60987 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
parents: 1
diff changeset
23 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
0
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
24 </action>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
25 </actions>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
26 </install>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
27 <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller.
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
28 It can be used as an ab initio program, which means it bases its prediction purely on the
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
29 sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
30 such as EST, MS/MS, protein alignments and synthenic genomic alignments.
1
5f78108125fd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
parents: 0
diff changeset
31 </readme>
0
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
32 </package>
cc0bd4986b48 Imported from capsule None
iuc
parents:
diff changeset
33 </tool_dependency>