Mercurial > repos > iuc > package_bedtools_2_18

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 14:57:11 -0400
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8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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1 <?xml version="1.0"?>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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2 <tool_dependency>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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3 <package name="bedtools2" version="2.18.2">
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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4 <install version="1.0">
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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5 <actions>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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6 <action type="shell_command">git clone --recursive https://github.com/arq5x/bedtools2.git</action>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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7 <action type="shell_command">git reset --hard 393fc3b9b766c76cc62e3f0df4e59ffbff3a55fb</action>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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8 <action type="shell_command">make</action>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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9 <action type="move_directory_files">
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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10 <source_directory>bin</source_directory>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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11 <destination_directory>$INSTALL_DIR/bin</destination_directory>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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12 </action>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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13 <action type="set_environment">
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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15 </action>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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16 </actions>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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17 </install>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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18 <readme>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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19 BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats.
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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20 https://github.com/arq5x/bedtools2
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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21 </readme>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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22 </package>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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23 </tool_dependency>
8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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8b168d35d56b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bedtools_2_18 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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