comparison tool_dependencies.xml @ 0:fb3a854c7104 draft default tip

Imported from capsule None
author iuc
date Mon, 25 Aug 2014 17:15:44 -0400
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-1:000000000000 0:fb3a854c7104
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="bedtools" version="2.19.1">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">https://github.com/arq5x/bedtools2/releases/download/v2.19.1/bedtools-2.19.1.tar.gz</action>
7 <action type="shell_command">make</action>
8 <action type="move_directory_files">
9 <source_directory>bin</source_directory>
10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
11 </action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 </action>
15 </actions>
16 </install>
17 <readme>BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats.</readme>
18 </package>
19 </tool_dependency>
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