Mercurial > repos > iuc > package_blast_plus_2_2_29

comparison tool_dependencies.xml @ 1:0b75bc235e70 draft

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Typo and metadata URL correction
author peterjc
date Wed, 30 Sep 2015 08:59:56 -0400
parents a2ec897aac2c
children 18496de7706f
comparison
equal deleted inserted replaced
0:a2ec897aac2c 1:0b75bc235e70
43 <destination_directory>$INSTALL_DIR</destination_directory> 43 <destination_directory>$INSTALL_DIR</destination_directory>
44 </action> 44 </action>
45 </actions> 45 </actions>
46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> 46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
47 <actions> 47 <actions>
48 <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action> 48 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
49 <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action> 49 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
50 <action type="shell_command">uname</action> 50 <action type="shell_command">uname</action>
51 <action type="shell_command">arch</action> 51 <action type="shell_command">arch</action>
52 <action type="shell_command">echo Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!</action> 52 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
53 <action type="shell_command">false</action> 53 <action type="shell_command">false</action>
54 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> 54 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
55 </actions> 55 </actions>
56 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> 56 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
57 <action type="set_environment"> 57 <action type="set_environment">
58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
59 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
59 </action> 60 </action>
60 </actions_group> 61 </actions_group>
61 </install> 62 </install>
62 <readme> 63 <readme>
63 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ 64 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+
64 binaries from the NCBI, which is faster than performing a local compliation, 65 binaries from the NCBI, which is faster than performing a local compilation,
65 avoids any issues with build dependencies, and is more reproducible between 66 avoids any issues with build dependencies, and is more reproducible between
66 installations as there is no variability from the compiler or library versions. 67 installations as there is no variability from the compiler or library versions.
67 68
68 For more details, see: 69 For more details, see:
69 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download 70 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download