Mercurial > repos > iuc > package_blast_plus_2_2_29

changeset 1:0b75bc235e70 draft

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Typo and metadata URL correction
author peterjc
date Wed, 30 Sep 2015 08:59:56 -0400
parents a2ec897aac2c
children 18496de7706f
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jan 13 11:29:52 2014 -0500
+++ b/tool_dependencies.xml	Wed Sep 30 08:59:56 2015 -0400
@@ -45,23 +45,24 @@
                 </actions>
                 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
                 <actions>
-                    <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action>
-                    <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action>
+                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
+                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
                     <action type="shell_command">uname</action>
                     <action type="shell_command">arch</action>
-                    <action type="shell_command">echo Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!</action>
+                    <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
                     <action type="shell_command">false</action>
                     <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
                 </actions>
                 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>
             </actions_group>
         </install>
         <readme>
 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+
-binaries from the NCBI, which is faster than performing a local compliation,
+binaries from the NCBI, which is faster than performing a local compilation,
 avoids any issues with build dependencies, and is more reproducible between
 installations as there is no variability from the compiler or library versions.