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1 <?xml version='1.0' encoding='utf-8'?>
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2 <tool_dependency>
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3 <package name="blast" version="2.7.1">
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4 <install version="1.0">
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5 <actions_group>
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6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
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7 <actions os="darwin" architecture="x86_64">
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8 <!-- Original URL https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-macosx.tar.gz -->
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9 <action type="download_by_url" sha256sum="1de96e0168771d02e1e4d5796e01c6f09073ce61f74aaba23c541750973554ea" target_filename="ncbi-blast-2.7.1+-x64-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.7.1_darwin_x64.tar.gz</action>
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10 <action type="move_directory_files">
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11 <source_directory>bin</source_directory>
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12 <destination_directory>$INSTALL_DIR</destination_directory>
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13 </action>
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14 </actions>
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15 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
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16 <actions os="linux" architecture="x86_64">
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17 <!-- Original URL https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz -->
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18 <action type="download_by_url" sha256sum="1df64183dcb1ee9493813b850bd83e7b83d3c04ea26f2ad7d2b5d0a6d53de917" target_filename="ncbi-blast-2.7.1+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.7.1_linux_x64.tar.gz</action>
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19 <action type="move_directory_files">
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20 <source_directory>bin</source_directory>
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21 <destination_directory>$INSTALL_DIR</destination_directory>
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22 </action>
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23 </actions>
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24 <actions>
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25 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not supported."</action>
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26 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
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27 <action type="shell_command">uname</action>
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28 <action type="shell_command">arch</action>
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29 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
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30 <action type="shell_command">false</action>
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31 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
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32 </actions>
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33 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
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34 <action type="set_environment">
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35 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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36 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
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37 </action>
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38 </actions_group>
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39 </install>
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40 <readme>
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41 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
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42 which is faster than performing a local compilation, avoids any issues with build
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43 dependencies, and is more reproducible between installations as there is no
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44 variability from the compiler or library versions.
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45
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46 Note that NCBI do not provide any 32 bit binaries anymore.
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47
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48 For more details, see:
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49 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
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50 </readme>
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51 </package>
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52 </tool_dependency>
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