Mercurial > repos > iuc > package_bowtie_1_1_2

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
author iuc
date Fri, 20 Nov 2015 06:48:21 -0500
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie" version="1.1.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url" sha256sum="b72c62bb00046d10e83ad1fb51049bb88fd8fa01745ce13c5aeadb8c008f0a73">https://codeload.github.com/BenLangmead/bowtie/zip/v1.1.2</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>bowtie</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="move_file">
                    <source>bowtie-align-s</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="move_file">
                    <source>bowtie-align-l</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="move_file">
                    <source>bowtie-build</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="move_file">
                    <source>bowtie-build-l</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="move_file">
                    <source>bowtie-build-s</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="move_file">
                    <source>bowtie-inspect</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="move_file">
                    <source>bowtie-inspect-l</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="move_file">
                    <source>bowtie-inspect-s</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme></readme>
    </package>
</tool_dependency>