Mercurial > repos > iuc > package_bowtie_1_1_2

changeset 0:a1c1a92e13a6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
author iuc
date Fri, 20 Nov 2015 06:48:21 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 51 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Nov 20 06:48:21 2015 -0500
@@ -0,0 +1,51 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bowtie" version="1.1.2">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" sha256sum="b72c62bb00046d10e83ad1fb51049bb88fd8fa01745ce13c5aeadb8c008f0a73">https://codeload.github.com/BenLangmead/bowtie/zip/v1.1.2</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>bowtie</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                    <source>bowtie-align-s</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                    <source>bowtie-align-l</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                    <source>bowtie-build</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                    <source>bowtie-build-l</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                    <source>bowtie-build-s</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                    <source>bowtie-inspect</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                    <source>bowtie-inspect-l</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                    <source>bowtie-inspect-s</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme></readme>
+    </package>
+</tool_dependency>