Mercurial > repos > iuc > package_bowtie_2_2_5

annotate tool_dependencies.xml @ 2:30bd7eaeddbf draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 3348609f4f90c884475ea833b3fa6182bf7696ca
author iuc
date Fri, 06 Nov 2015 15:18:18 -0500
parents 8b300d21e6bd
children
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bowtie2" version="2.2.5">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions os="linux" architecture="x86_64">
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7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/bowtie2/bowtie2-2.2.5-Linux-x86_64.tar.gz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR</destination_directory>
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11 </action>
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12 </actions>
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13 <actions os="darwin" architecture="x86_64">
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14 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-macos-x86_64.zip</action>
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15 <action type="move_directory_files">
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16 <source_directory>.</source_directory>
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17 <destination_directory>$INSTALL_DIR</destination_directory>
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18 </action>
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19 </actions>
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20 <actions>
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21 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip</action>
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22 <action type="shell_command">make</action>
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23 <action type="move_file">
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24 <source>bowtie2</source>
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25 <destination>$INSTALL_DIR/bin</destination>
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26 </action>
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27 <action type="move_file">
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28 <source>bowtie2-build</source>
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29 <destination>$INSTALL_DIR/bin</destination>
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30 </action>
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31 <action type="move_file">
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32 <source>bowtie2-inspect</source>
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33 <destination>$INSTALL_DIR/bin</destination>
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34 </action>
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35 <action type="move_file">
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36 <source>bowtie</source>
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37 <destination>$INSTALL_DIR/bin</destination>
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38 </action>
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39 <action type="move_file">
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40 <source>bowtie-build</source>
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41 <destination>$INSTALL_DIR/bin</destination>
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42 </action>
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43 <action type="move_file">
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44 <source>bowtie-inspect</source>
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45 <destination>$INSTALL_DIR/bin</destination>
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46 </action>
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47 </actions>
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48 <action type="set_environment">
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49 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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50 </action>
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51 </actions_group>
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52 </install>
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53 <readme></readme>
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54 </package>
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55 </tool_dependency>