Mercurial > repos > iuc > package_bowtie_2_2_5

changeset 1:8b300d21e6bd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:11:42 -0400
parents 39c07d717634
children 30bd7eaeddbf
files tool_dependencies.xml
diffstat 1 files changed, 28 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu May 14 09:37:12 2015 -0400
+++ b/tool_dependencies.xml	Fri Jul 17 10:11:42 2015 -0400
@@ -10,6 +10,34 @@
                         <destination_directory>$INSTALL_DIR</destination_directory>
                     </action>
                 </actions>
+                <actions>
+                    <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip</action>
+                    <action type="shell_command">make</action>
+                    <action type="move_file">
+                        <source>bowtie2</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>bowtie2-build</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>bowtie2-inspect</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>bowtie</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>bowtie-build</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>bowtie-inspect</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                </actions>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>