Mercurial > repos > iuc > package_cummerbund_2_8_2

diff tool_dependencies.xml @ 3:f18bcdb8c6c5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_cummerbund_2_8_2 commit f6a91dff96780be542371e30270e23f8aac65770
author iuc
date Sun, 24 May 2015 10:49:40 -0400
parents d9d166e54a21
children 13c270433440
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jan 07 15:58:28 2015 -0500
+++ b/tool_dependencies.xml	Sun May 24 10:49:40 2015 -0400
@@ -1,15 +1,21 @@
 <?xml version="1.0"?>
 <tool_dependency>
+    <package name="libcurl" version="7.35">
+        <repository changeset_revision="8fe20c4f5aff" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
     <package name="R" version="3.1.2">
-        <repository changeset_revision="7cb487a32bde" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="cummeRbund" version="2.8.2">
         <install version="1.0">
             <actions>
                 <action type="setup_r_environment">
-                    <repository changeset_revision="7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="R" version="3.1.2" />
                     </repository>
+                    <repository changeset_revision="8fe20c4f5aff" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="libcurl" version="7.35" />
+                    </repository>
                     <package>https://depot.galaxyproject.org/package/noarch/DBI_0.3.1.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/bitops_1.0-6.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/RCurl_1.95-4.5.tar.gz</package>
@@ -54,21 +60,21 @@
                     <package>https://depot.galaxyproject.org/package/noarch/R.methodsS3_1.6.1.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/matrixStats_0.12.2.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/BiocGenerics_0.12.1.tar.gz</package>
-                    <package>https://depot.galaxyproject.org/package/noarch/S4Vectors_0.4.0.tar.gz</package>
+                    <package>http://bioarchive.s3.amazonaws.com/S4Vectors_0.4.0.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/IRanges_2.0.1.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/GenomeInfoDb_1.2.4.tar.gz</package>
-                    <package>https://depot.galaxyproject.org/package/noarch/XVector_0.6.0.tar.gz</package>
+                    <package>http://bioarchive.s3.amazonaws.com/XVector_0.6.0.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/GenomicRanges_1.18.3.tar.gz</package>
-                    <package>https://depot.galaxyproject.org/package/noarch/zlibbioc_1.12.0.tar.gz</package>
+                    <package>http://bioarchive.s3.amazonaws.com/zlibbioc_1.12.0.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/Biostrings_2.34.1.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/Rsamtools_1.18.2.tar.gz</package>
-                    <package>https://depot.galaxyproject.org/package/noarch/BiocParallel_1.0.0.tar.gz</package>
-                    <package>https://depot.galaxyproject.org/package/noarch/Biobase_2.26.0.tar.gz</package>
+                    <package>http://bioarchive.s3.amazonaws.com/BiocParallel_1.0.0.tar.gz</package>
+                    <package>http://bioarchive.s3.amazonaws.com/Biobase_2.26.0.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/AnnotationDbi_1.28.1.tar.gz</package>
-                    <package>https://depot.galaxyproject.org/package/noarch/biomaRt_2.22.0.tar.gz</package>
+                    <package>http://bioarchive.s3.amazonaws.com/biomaRt_2.22.0.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/GenomicAlignments_1.2.1.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/rtracklayer_1.26.2.tar.gz</package>
-                    <package>https://depot.galaxyproject.org/package/noarch/BSgenome_1.34.0.tar.gz</package>
+                    <package>https://depot.galaxyproject.org/package/noarch/BSgenome_1.34.1.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/GenomicFeatures_1.18.3.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/VariantAnnotation_1.12.7.tar.gz</package>
                     <package>https://depot.galaxyproject.org/package/noarch/biovizBase_1.14.1.tar.gz</package>