Mercurial > repos > iuc > package_diamond_0_7_10

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
author iuc
date Wed, 09 Dec 2015 14:23:51 -0500
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-1:000000000000 0:c538574b1553
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="diamond" version="0.7.10">
4 <install version="1.0">
5 <actions_group>
6 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
7 <actions os="linux" architecture="x86_64">
8 <action sha256sum="db6cf64839b989306cfba752c05c192acc1bce133e0821a63e70a882d22b96aa" type="download_by_url">https://github.com/bbuchfink/diamond/releases/download/v0.7.10/diamond-linux64.tar.gz</action>
9 <action type="move_file">
10 <source>diamond</source>
11 <destination>$INSTALL_DIR</destination>
12 </action>
13 </actions>
14 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
15 <actions>
16 <action target_filename="diamond-0.7.10.tar.gz" sha256sum="a7164ce53490d6bd37ea4232778aab714d82c8b071e0969931af2fc9aa1c1ca1" type="download_by_url">https://github.com/bbuchfink/diamond/archive/v0.7.10.tar.gz</action>
17 <action type="shell_command"><![CDATA[ cd src && ./install-boost ]]></action>
18 <action type="shell_command"><![CDATA[ cd src && make ]]></action>
19 <action type="move_file">
20 <source>bin/diamond</source>
21 <destination>$INSTALL_DIR</destination>
22 </action>
23 </actions>
24 <action type="set_environment">
25 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
26 </action>
27 </actions_group>
28 </install>
29 <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme>
30 </package>
31 </tool_dependency>
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