Mercurial > repos > iuc > package_fastqc_0_11_4

comparison tool_dependencies.xml @ 2:a8f485b2efd9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
author iuc
date Tue, 19 Jan 2016 09:37:46 -0500
parents a288b8869b7b
children
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1:a288b8869b7b 2:a8f485b2efd9
6 <actions os="linux" architecture="x86_64"> 6 <actions os="linux" architecture="x86_64">
7 <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action> 7 <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action>
8 <action type="move_directory_files"> 8 <action type="move_directory_files">
9 <source_directory>../FastQC</source_directory> 9 <source_directory>../FastQC</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory> 10 <destination_directory>$INSTALL_DIR</destination_directory>
11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action> 11 </action>
12 <action type="chmod">
13 <file mode="755">$INSTALL_DIR/fastqc</file>
14 </action>
15 <action type="set_environment">
16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
17 <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
12 </action> 18 </action>
13 </actions> 19 </actions>
14 <actions os="darwin" architecture="x86_64"> 20 <actions os="darwin" architecture="x86_64">
15 <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action> 21 <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action>
16 <action type="shell_command"> 22 <action type="shell_command">
17 hdiutil attach fastqc_v0.11.4.dmg &amp;&amp; 23 hdiutil attach fastqc_0.11.4_darwin_all.dmg &amp;&amp;
18 cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR &amp;&amp; 24 cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR &amp;&amp;
19 hdiutil detach /Volumes/FastQC 25 hdiutil detach /Volumes/FastQC
20 </action> 26 </action>
21 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action> 27 <action type="set_environment">
28 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC.app/Contents/MacOS</environment_variable>
29 <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR/FastQC.app/Contents/MacOS</environment_variable>
30 </action>
22 </actions> 31 </actions>
23 <action type="set_environment">
24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
25 <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
26 </action>
27 </actions_group> 32 </actions_group>
28 </install> 33 </install>
29 </package> 34 </package>
30 </tool_dependency> 35 </tool_dependency>