Mercurial > repos > iuc > package_fastqc_0_11_4

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
author iuc
date Tue, 19 Jan 2016 09:37:46 -0500
parents a288b8869b7b
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="FastQC" version="0.11.4">
        <install version="1.0">
            <actions_group>
                <actions os="linux" architecture="x86_64">
                    <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action>
                    <action type="move_directory_files">
                        <source_directory>../FastQC</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                    <action type="chmod">
                        <file mode="755">$INSTALL_DIR/fastqc</file>
                    </action>
                    <action type="set_environment">
                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                        <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                    </action>
                </actions>
                <actions os="darwin" architecture="x86_64">
                    <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action>
                    <action type="shell_command">
                        hdiutil attach fastqc_0.11.4_darwin_all.dmg &amp;&amp;
                        cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR &amp;&amp;
                        hdiutil detach /Volumes/FastQC
                    </action>
                    <action type="set_environment">
                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC.app/Contents/MacOS</environment_variable>
                        <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR/FastQC.app/Contents/MacOS</environment_variable>
                    </action>
                </actions>
            </actions_group>
        </install>
    </package>
</tool_dependency>