Mercurial > repos > iuc > package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee

diff tool_dependencies.xml @ 0:bed1ab604b55 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 14:58:22 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue May 19 14:58:22 2015 -0400
@@ -0,0 +1,30 @@
+<tool_dependency>
+    <package name="Fido" version="f63cd47b8414f87d57b8c1b713d34a04b29c7aee">
+        <install version="1.0">
+            <actions>   
+                <action type="shell_command">git clone --recursive https://github.com/hendrikweisser/Fido.git</action>
+                <action type="shell_command">git reset --hard f63cd47b8414f87d57b8c1b713d34a04b29c7aee</action>
+                <action type="make_directory">build</action>
+                <action type="change_directory">build</action>
+                <action type="shell_command">cmake ..</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>Fido</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
+                    <source>FidoChooseParameters</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="FIDO_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Fido is a free software tool used in the area of computational proteomics. It calculates posterior probabilities for protein
+            identifications based on database searches of tandem mass spectra. The website for Fido is here: http://noble.gs.washington.edu/proj/fido/
+        </readme>
+    </package>
+</tool_dependency>