Mercurial > repos > iuc > package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee

view tool_dependencies.xml @ 0:bed1ab604b55 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 14:58:22 -0400
parents
children
line wrap: on
line source

<tool_dependency>
    <package name="Fido" version="f63cd47b8414f87d57b8c1b713d34a04b29c7aee">
        <install version="1.0">
            <actions>   
                <action type="shell_command">git clone --recursive https://github.com/hendrikweisser/Fido.git</action>
                <action type="shell_command">git reset --hard f63cd47b8414f87d57b8c1b713d34a04b29c7aee</action>
                <action type="make_directory">build</action>
                <action type="change_directory">build</action>
                <action type="shell_command">cmake ..</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>Fido</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>FidoChooseParameters</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="FIDO_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Fido is a free software tool used in the area of computational proteomics. It calculates posterior probabilities for protein
            identifications based on database searches of tandem mass spectra. The website for Fido is here: http://noble.gs.washington.edu/proj/fido/
        </readme>
    </package>
</tool_dependency>