Mercurial > repos > iuc > package_jbrowse_1_11_6

changeset 0:d5ab749c9e97 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_11_6 commit 685773d3da40afdc4d14846d4935b3b0a100f56e
author iuc
date Mon, 04 May 2015 17:19:56 -0400
parents
children 6cc678412457
files tool_dependencies.xml
diffstat 1 files changed, 62 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon May 04 17:19:56 2015 -0400
@@ -0,0 +1,62 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="jbrowse" version="1.11.6">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=99&amp;fmt=.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="setup_perl_environment">
+                    <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+
+                    <package>https://cpan.metacpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.42.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/L/LE/LEONT/Test-Harness-3.35.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/E/EX/EXODIST/Test-Simple-1.001014.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA/JSON-2.90.tar.gz</package>
+
+                    <package>https://cpan.metacpan.org/authors/id/F/FA/FAYS/Digest-Crc32-0.01.tar.gz</package>
+
+                    <package>https://cpan.metacpan.org/authors/id/G/GA/GARU/Clone-0.38.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/R/RE/REHSACK/Hash-Merge-0.200.tar.gz</package>
+
+                    <package>https://cpan.metacpan.org/authors/id/S/SA/SAPER/XSLoader-0.16.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/N/NW/NWCLARK/Devel-Size-0.80.tar.gz</package>
+
+                    <package>https://cpan.metacpan.org/authors/id/T/TH/THOSPEL/Heap-Simple-0.13.tar.gz</package>
+
+                    <package>https://cpan.metacpan.org/authors/id/N/NE/NEILB/Pod-Escapes-1.07.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/J/JE/JESSE/Test-1.26.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/M/MU/MUIR/modules/Text-Tabs+Wrap-2013.0523.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.42.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/L/LE/LEONT/Test-Harness-3.35.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/D/DA/DANKOGAI/Encode-2.73.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/D/DW/DWHEELER/Pod-Simple-3.30.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/T/TO/TODDR/Exporter-5.70.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/S/SH/SHAY/perl-5.20.2.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/E/EX/EXODIST/Test-Simple-1.001014.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/C/CO/CORION/parent-0.232.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/D/DL/DLAND/File-Path-2.09.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/S/SA/SAPER/XSLoader-0.16.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/R/RJ/RJBS/Carp-1.36.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/File-Temp-0.2304.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/M/MA/MAREKR/Pod-Usage-1.67.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/R/RB/RBUELS/Bio-GFF3-2.0.tar.gz</package>
+
+                    <package>https://github.com/bgruening/download_store/raw/master/HeapSimpleXS/Heap-Simple-XS-0.10.tar.gz</package>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="JBROWSE_SOURCE_DIR">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Copy of the JBrowse source code, with dependencies
+        </readme>
+    </package>
+</tool_dependency>