Mercurial > repos > iuc > package_jbrowse_1_12_0

annotate tool_dependencies.xml @ 0:22be3ae5599d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
author iuc
date Thu, 31 Dec 2015 13:56:46 -0500
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children c36947f2b72b
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22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
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1 <?xml version="1.0"?>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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2 <tool_dependency>
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3 <package name="perl" version="5.18.1">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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4 <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
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5 </package>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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6 <package name="bundle_jbrowse" version="1.12.0">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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7 <repository changeset_revision="52153ec17769" name="package_perl_bundle_jbrowse_1_12_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
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8 </package>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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9 <package name="jbrowse" version="1.12.0">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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10 <install version="1.0">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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11 <actions>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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12 <action sha256sum="a8bb2a56f1ca0470df2d072811db1f90fd6756feed92d8656eba1e6f67f438d3" type="download_by_url">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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13 http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=101&amp;fmt=.zip
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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14 </action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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15 <action sha256sum="84dfdc81c8cae61ee61e03fe6be1b9d76813d933c268609a2c24dc85349b5840" target_filename="dojo.js.patch" type="download_by_url">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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16 https://gist.github.com/erasche/9cf020138d787eb47891/raw/e6ac8852be51c4869bd10d1977d2f68c731ffbc1/dojo.js.patch
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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17 </action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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18 <action type="shell_command">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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19 patch -p1 &lt; ../dojo.js.patch
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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20 </action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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21 <action type="change_directory">..</action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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22 <action type="move_directory_files">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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23 <source_directory>JBrowse-1.12.0</source_directory>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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24 <destination_directory>$INSTALL_DIR/JBrowse-1.12.0</destination_directory>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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25 </action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
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26 <action type="set_environment">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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27 <environment_variable action="set_to" name="JBROWSE_SOURCE_DIR">$INSTALL_DIR/JBrowse-1.12.0</environment_variable>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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28 </action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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29 </actions>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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30 </install>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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31 <readme>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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32 Copy of the JBrowse 1.12.0 source code, with dependencies
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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33 </readme>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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34 </package>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
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35 </tool_dependency>