Mercurial > repos > iuc > package_jbrowse_1_12_0

changeset 0:22be3ae5599d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
author iuc
date Thu, 31 Dec 2015 13:56:46 -0500
parents
children c36947f2b72b
files tool_dependencies.xml
diffstat 1 files changed, 35 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Dec 31 13:56:46 2015 -0500
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bundle_jbrowse" version="1.12.0">
+        <repository changeset_revision="52153ec17769" name="package_perl_bundle_jbrowse_1_12_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="jbrowse" version="1.12.0">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="a8bb2a56f1ca0470df2d072811db1f90fd6756feed92d8656eba1e6f67f438d3" type="download_by_url">
+                    http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=101&amp;fmt=.zip
+                </action>
+                <action sha256sum="84dfdc81c8cae61ee61e03fe6be1b9d76813d933c268609a2c24dc85349b5840" target_filename="dojo.js.patch" type="download_by_url">
+                    https://gist.github.com/erasche/9cf020138d787eb47891/raw/e6ac8852be51c4869bd10d1977d2f68c731ffbc1/dojo.js.patch
+                </action>
+                <action type="shell_command">
+                    patch -p1 &lt; ../dojo.js.patch
+                </action>
+                <action type="change_directory">..</action>
+                <action type="move_directory_files">
+                    <source_directory>JBrowse-1.12.0</source_directory>
+                    <destination_directory>$INSTALL_DIR/JBrowse-1.12.0</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="JBROWSE_SOURCE_DIR">$INSTALL_DIR/JBrowse-1.12.0</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Copy of the JBrowse 1.12.0 source code, with dependencies
+        </readme>
+    </package>
+</tool_dependency>