Mercurial > repos > iuc > package_jbrowse_1_12_0
comparison tool_dependencies.xml @ 0:22be3ae5599d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
| author | iuc |
|---|---|
| date | Thu, 31 Dec 2015 13:56:46 -0500 |
| parents | |
| children | c36947f2b72b |
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| -1:000000000000 | 0:22be3ae5599d |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="perl" version="5.18.1"> | |
| 4 <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="bundle_jbrowse" version="1.12.0"> | |
| 7 <repository changeset_revision="52153ec17769" name="package_perl_bundle_jbrowse_1_12_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="jbrowse" version="1.12.0"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action sha256sum="a8bb2a56f1ca0470df2d072811db1f90fd6756feed92d8656eba1e6f67f438d3" type="download_by_url"> | |
| 13 http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=101&fmt=.zip | |
| 14 </action> | |
| 15 <action sha256sum="84dfdc81c8cae61ee61e03fe6be1b9d76813d933c268609a2c24dc85349b5840" target_filename="dojo.js.patch" type="download_by_url"> | |
| 16 https://gist.github.com/erasche/9cf020138d787eb47891/raw/e6ac8852be51c4869bd10d1977d2f68c731ffbc1/dojo.js.patch | |
| 17 </action> | |
| 18 <action type="shell_command"> | |
| 19 patch -p1 < ../dojo.js.patch | |
| 20 </action> | |
| 21 <action type="change_directory">..</action> | |
| 22 <action type="move_directory_files"> | |
| 23 <source_directory>JBrowse-1.12.0</source_directory> | |
| 24 <destination_directory>$INSTALL_DIR/JBrowse-1.12.0</destination_directory> | |
| 25 </action> | |
| 26 <action type="set_environment"> | |
| 27 <environment_variable action="set_to" name="JBROWSE_SOURCE_DIR">$INSTALL_DIR/JBrowse-1.12.0</environment_variable> | |
| 28 </action> | |
| 29 </actions> | |
| 30 </install> | |
| 31 <readme> | |
| 32 Copy of the JBrowse 1.12.0 source code, with dependencies | |
| 33 </readme> | |
| 34 </package> | |
| 35 </tool_dependency> |