Mercurial > repos > iuc > package_khmer_2_0

comparison tool_dependencies.xml @ 1:09e6ec4fbbe0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
author iuc
date Thu, 12 Nov 2015 10:36:05 -0500
parents f257b2dba774
children c02c1e1abd48
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0:f257b2dba774 1:09e6ec4fbbe0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bz2file" version="0.98">
4 <repository changeset_revision="73382c8fa8f3" name="package_bz2file_0_98" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="screed" version="0.9">
7 <repository changeset_revision="639e5e37404d" name="package_screed_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
3 <package name="khmer" version="2.0"> 9 <package name="khmer" version="2.0">
4 <install version="1.0"> 10 <install version="1.0">
5 <actions> 11 <actions>
6 <action type="setup_python_environment"> 12 <action md5sum="1f610abd021254e21b082179a100cd39" type="download_by_url">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</action>
7 <repository changeset_revision="eb37ce21eef1" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 13 <action type="make_directory">$INSTALL_DIR/lib/python</action>
8 <package name="python" version="2.7" /> 14 <action type="shell_command">
9 </repository> 15 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
10 <package md5sum="1f610abd021254e21b082179a100cd39">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</package> 16 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
17 </action>
18 <action type="set_environment">
19 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
11 </action> 21 </action>
12 </actions> 22 </actions>
13 </install> 23 </install>
14 </package> 24 </package>
15 </tool_dependency> 25 </tool_dependency>