Mercurial > repos > iuc > package_khmer_2_0

view tool_dependencies.xml @ 1:09e6ec4fbbe0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
author iuc
date Thu, 12 Nov 2015 10:36:05 -0500
parents f257b2dba774
children c02c1e1abd48
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bz2file" version="0.98">
        <repository changeset_revision="73382c8fa8f3" name="package_bz2file_0_98" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="screed" version="0.9">
        <repository changeset_revision="639e5e37404d" name="package_screed_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="khmer" version="2.0">
        <install version="1.0">
            <actions>
                <action md5sum="1f610abd021254e21b082179a100cd39" type="download_by_url">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>