Mercurial > repos > iuc > package_kraken_0_10_6_eaf8fb68
changeset 0:0743afe4dcb8 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_kraken_0_10_6_eaf8fb68/ commit 96e78bfc79601ce09b1e8b13e7927670121e80c1
author | iuc |
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date | Mon, 21 Mar 2016 11:03:32 -0400 |
parents | |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 33 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Mar 21 11:03:32 2016 -0400 @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="kraken" version="0.10.6-eaf8fb68"> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url" sha256sum="c6f9ed4682b6ed4c8aa5b31d679cdd781830bd7e5b661a64062f91764cdb6441">https://depot.galaxyproject.org/package/linux/x86_64/kraken/kraken_0.10.6-unreleased-eaf8fb68_linux_x64.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions> + <action type="download_by_url">https://github.com/DerrickWood/kraken/archive/eaf8fb684d5c93b0b06d1ab5cc0400ba4e8aa625.tar.gz</action> + <action type="shell_command">sh install_kraken.sh $INSTALL_DIR/bin</action> + </actions> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme> +<![CDATA[ +Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained +through metagenomic studies. Previous attempts by other bioinformatics software to accomplish +this task have often used sequence alignment or machine learning techniques that were quite +slow, leading to the development of less sensitive but much faster abundance estimation programs. +Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers +and a novel classification algorithm. +]]> + </readme> + </package> +</tool_dependency>