Mercurial > repos > iuc > package_lapack_3_4

changeset 2:e87b2acfb5d2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit 8e222c088dac55ffcb28fd892dd8fea991791fda-dirty
author iuc
date Tue, 07 Jun 2016 05:33:36 -0400
parents 5686c79a72d5
children 716579eca632
files tool_dependencies.xml
diffstat 1 files changed, 17 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Jul 17 10:34:29 2015 -0400
+++ b/tool_dependencies.xml	Tue Jun 07 05:33:36 2016 -0400
@@ -1,23 +1,30 @@
+<?xml version="1.0"?>
 <tool_dependency>
+    <package name="cmake" version="3.2.3">
+        <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
     <package name="lapack" version="3.4.2">
         <install version="1.0">
             <actions>
-                <!-- first action is always downloading -->
-                <action type="download_by_url">http://www.netlib.org/lapack/lapack-3.4.2.tgz</action>
+                <action sha256sum="60a65daaf16ec315034675942618a2230521ea7adf85eea788ee54841072faf0" type="download_by_url">https://depot.galaxyproject.org/software/lapack/lapack_3.4.2_src_all.tar.gz</action>
 
-                <action type="shell_command">mkdir build</action>
+                <!-- compile both static and shared library -->
                 <action type="shell_command">
+                    mkdir build &amp;&amp;
                     cd build &amp;&amp;
-                    cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/lapack -DCMAKE_Fortran_FLAGS='-O2 -fPIC'
-                </action>
-                <action type="shell_command">cd build &amp;&amp; make</action>
-                <action type="shell_command">cd build &amp;&amp; make install</action>
-
+                    cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/lapack -DCMAKE_Fortran_FLAGS='-O2 -fPIC' &amp;&amp;
+                    make &amp;&amp;
+                    make install &amp;&amp;
+                    cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/lapack -DBUILD_SHARED_LIBS=ON -DCMAKE_Fortran_FLAGS='-O2 -fPIC' &amp;&amp;
+                    make &amp;&amp;
+                    make install
+                    </action>
                 <action type="set_environment">
-                    <environment_variable name="LAPACK_LIB_DIR" action="set_to">$INSTALL_DIR/lapack/lib</environment_variable>
+                    <environment_variable action="set_to" name="LAPACK_LIB_DIR">$INSTALL_DIR/lapack/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lapack/lib</environment_variable>
                 </action>
             </actions>
         </install>
-        <readme>LAPACK requires gcc and gfortran. LAPACK_LIB_DIR will be set (including liblapack.a and libblas.a). </readme>
+        <readme>LAPACK requires gcc, gfortran and cmake. LAPACK_LIB_DIR will be set (including liblapack.a and libblas.a). </readme>
     </package>
 </tool_dependency>