comparison tool_dependencies.xml @ 2:18e2e2ef0f08 draft default tip

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author iuc
date Fri, 22 Jul 2016 09:17:26 -0400
parents d63425547b4c
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1:d63425547b4c 2:18e2e2ef0f08
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="libxml2" version="2.9.3">
4 <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
3 <package name="libxslt" version="1.1.28"> 6 <package name="libxslt" version="1.1.28">
4 <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="perl_xml_parser_expat" version="2.41">
7 <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="meme" version="4.11.0">
10 <install version="1.0"> 7 <install version="1.0">
11 <actions> 8 <actions>
12 <action sha256sum="5dc4841f4816ef25bdb4bd088c76606c1b42726e7d65cc417f0f8c49fe7e237f" type="download_by_url">https://depot.galaxyproject.org/software/meme/meme_4.11.0_src_all.tar.gz</action> 9 <action sha256sum="5fc7151a57b89c03d7b825df5a0fae0a8d5f05674c0e7cf2937ecec4d54a028c" type="download_by_url">ftp://xmlsoft.org/libxml2/libxslt-1.1.28.tar.gz</action>
13 <action type="set_environment_for_install"> 10 <action type="set_environment_for_install">
14 <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 11 <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
15 <package name="libxslt" version="1.1.28" /> 12 <package name="libxml2" version="2.9.3" />
16 </repository> 13 </repository>
17 <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="perl_xml_parser_expat" version="2.41" />
19 </repository>
20 </action>
21 <action type="shell_command">
22 # Handle this bug: https://groups.google.com/forum/#!topic/meme-suite/rHmLmSt2IiQ
23 sed -i.bak -e 's|sprintf(evt_string, "%8g", dataset-&gt;evt)|sprintf(evt_string, "%g", dataset-&gt;evt)|' src/display.c
24 </action> 14 </action>
25 <action type="autoconf" /> 15 <action type="autoconf" />
26 <action type="set_environment"> 16 <action type="set_environment">
17 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[PKG_CONFIG_PATH]</environment_variable>
18 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
19 <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable>
27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
28 <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable> 21 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LD_LIBRARY_PATH]</environment_variable>
22 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
23 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$ENV[DYLD_LIBRARY_PATH]</environment_variable>
24 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
25 <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[LIBRARY_PATH]</environment_variable>
26 <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
27 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[C_INCLUDE_PATH]</environment_variable>
28 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
29 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[CPLUS_INCLUDE_PATH]</environment_variable>
30 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
29 </action> 31 </action>
30 </actions> 32 </actions>
31 </install> 33 </install>
32 <readme> 34 <readme />
33 </readme>
34 </package> 35 </package>
35 </tool_dependency> 36 </tool_dependency>