diff tool_dependencies.xml @ 2:18e2e2ef0f08 draft default tip

Uploaded
author iuc
date Fri, 22 Jul 2016 09:17:26 -0400
parents d63425547b4c
children
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jun 15 08:07:50 2016 -0400
+++ b/tool_dependencies.xml	Fri Jul 22 09:17:26 2016 -0400
@@ -1,35 +1,36 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="libxslt" version="1.1.28">
-        <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <package name="libxml2" version="2.9.3">
+        <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
-    <package name="perl_xml_parser_expat" version="2.41">
-        <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="meme" version="4.11.0">
+    <package name="libxslt" version="1.1.28">
         <install version="1.0">
             <actions>
-                <action sha256sum="5dc4841f4816ef25bdb4bd088c76606c1b42726e7d65cc417f0f8c49fe7e237f" type="download_by_url">https://depot.galaxyproject.org/software/meme/meme_4.11.0_src_all.tar.gz</action>
+                <action sha256sum="5fc7151a57b89c03d7b825df5a0fae0a8d5f05674c0e7cf2937ecec4d54a028c" type="download_by_url">ftp://xmlsoft.org/libxml2/libxslt-1.1.28.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-                        <package name="libxslt" version="1.1.28" />
+                    <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="libxml2" version="2.9.3" />
                     </repository>
-                    <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-                        <package name="perl_xml_parser_expat" version="2.41" />
-                    </repository>
-                </action>
-                <action type="shell_command">
-                    # Handle this bug: https://groups.google.com/forum/#!topic/meme-suite/rHmLmSt2IiQ
-                    sed -i.bak -e 's|sprintf(evt_string, "%8g", dataset-&gt;evt)|sprintf(evt_string, "%g", dataset-&gt;evt)|' src/display.c
                 </action>
                 <action type="autoconf" />
                 <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[PKG_CONFIG_PATH]</environment_variable>
+                    <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                    <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LD_LIBRARY_PATH]</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$ENV[DYLD_LIBRARY_PATH]</environment_variable>
+                    <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[LIBRARY_PATH]</environment_variable>
+                    <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[C_INCLUDE_PATH]</environment_variable>
+                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[CPLUS_INCLUDE_PATH]</environment_variable>
+                    <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
                 </action>
             </actions>
         </install>
-        <readme>
-        </readme>
+        <readme />
     </package>
 </tool_dependency>