Mercurial > repos > iuc > package_macs2_2_1_0_20151222
changeset 0:ae3cfa214a33 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_macs2_2_1_0_20151222 commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
| author | iuc |
|---|---|
| date | Wed, 27 Jan 2016 15:21:48 -0500 |
| parents | |
| children | e1370f7d5e2f |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 40 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Jan 27 15:21:48 2016 -0500 @@ -0,0 +1,40 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="numpy" version="1.7.1"> + <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="scipy" version="0.12.0"> + <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="macs2" version="2.1.0.20151222"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/M/MACS2/MACS2-2.1.0.20151222.tar.gz</action> + + <action type="set_environment_for_install"> + <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="numpy" version="1.7.1" /> + </repository> + <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="scipy" version="0.12.0" /> + </repository> + </action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <!-- exporting the CFLAGS and CPPFLAGS are due to http://stackoverflow.com/questions/22313407/clang-error-unknown-argument-mno-fused-madd-python-package-installation-fa --> + <action type="shell_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin + </action> + <action type="set_environment"> + <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_MACS2">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + <readme>Macs2 installation instructions. MACS2 can be found at https://github.com/taoliu/MACS</readme> + </package> +</tool_dependency>