Mercurial > repos > iuc > package_ncbi_vdb_2_6_2
changeset 0:be38d36c735d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
author | iuc |
---|---|
date | Tue, 17 May 2016 14:14:01 -0400 |
parents | |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 47 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue May 17 14:14:01 2016 -0400 @@ -0,0 +1,47 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="perl" version="5.18.1"> + <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="libxml2" version="2.9.3"> + <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="ngs_sdk" version="1.2.3"> + <repository changeset_revision="3da0f4d34e92" name="package_ngs_sdk_1_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="libmagic" version="5.25"> + <repository changeset_revision="21b08f55a6ac" name="package_libmagic_5_25" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="ncbi_vdb" version="2.6.2"> + <install version="1.0"> + <actions> + <action sha256sum="c310edacd1a4f98a5cfab702f3eede98977ef64831f002fddd7728ed7e2034f4" target_filename="ncbi-vdb-2.6.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.6.2.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="perl" version="5.18.1" /> + </repository> + <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="libxml2" version="2.9.3" /> + </repository> + <repository changeset_revision="3da0f4d34e92" name="package_ngs_sdk_1_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="ngs_sdk" version="1.2.3" /> + </repository> + <repository changeset_revision="21b08f55a6ac" name="package_libmagic_5_25" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="libmagic" version="5.25" /> + </repository> + </action> + <action type="autoconf">--prefix=$INSTALL_DIR --with-ngs-sdk-prefix=$NGS_SDK_DIR --with-xml2-prefix=$LIBXML2_ROOT_DIR --build=$INSTALL_DIR</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + ncbi-vdb, required for sra-tools package. + </readme> + </package> +</tool_dependency>