Mercurial > repos > iuc > package_numpy_1_9

comparison tool_dependencies.xml @ 4:c8f7a7d73466 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 2249d643284ee782d882cd200729a86a2c6bb744
author iuc
date Thu, 31 Dec 2015 14:01:41 -0500
parents 9cc1138e5e3e
children 842bb2f02723
comparison
equal deleted inserted replaced
3:9cc1138e5e3e 4:c8f7a7d73466
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="atlas" version="3.10.2"> 3 <package name="atlas" version="3.10.2">
4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="python" version="2.7">
7 <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
6 <package name="numpy" version="1.9"> 9 <package name="numpy" version="1.9">
7 <install version="1.0"> 10 <install version="1.0">
8 <actions> 11 <actions>
9 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5#510cee1c6a131e0a9eb759aa2cc62609</action>
10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
11 <action type="set_environment_for_install"> 12 <action type="set_environment_for_install">
12 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 13 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
13 <package name="atlas" version="3.10.2" /> 14 <package name="atlas" version="3.10.2" />
14 </repository> 15 </repository>
15 </action> 16 </action>
16 <action type="shell_command"> 17 <action type="setup_python_environment">
17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 18 <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
18 export ATLAS=$ATLAS_ROOT_PATH &amp;&amp; 19 <package name="python" version="2.7" />
19 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 20 </repository>
21 <package md5sum="78842b73560ec378142665e712ae4ad9">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz</package>
20 </action> 22 </action>
21 <action type="set_environment"> 23 <action type="set_environment">
22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 24 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
23 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
25 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> 26 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
26 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable> 27 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
27 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> 28 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
29 <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
28 </action> 30 </action>
29 </actions> 31 </actions>
30 </install> 32 </install>
31 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> 33 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
32 </package> 34 </package>