view tool_dependencies.xml @ 4:c8f7a7d73466 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 2249d643284ee782d882cd200729a86a2c6bb744
author iuc
date Thu, 31 Dec 2015 14:01:41 -0500
parents 9cc1138e5e3e
children 842bb2f02723
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<?xml version="1.0"?>
<tool_dependency>
        <package name="atlas" version="3.10.2">
            <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
        </package>
        <package name="python" version="2.7">
            <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
        </package>
        <package name="numpy" version="1.9">
            <install version="1.0">
                <actions>
                    <action type="set_environment_for_install">
                        <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                            <package name="atlas" version="3.10.2" />
                        </repository>
                    </action>
                    <action type="setup_python_environment">
                        <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                            <package name="python" version="2.7" />
                        </repository>
                        <package md5sum="78842b73560ec378142665e712ae4ad9">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz</package>
                    </action>
                    <action type="set_environment">
                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                        <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
                        <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
                        <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
                        <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
                    </action>
                </actions>
            </install>
            <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
        </package>
</tool_dependency>