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1 <?xml version="1.0"?>
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2 <tool_dependency>
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1
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3 <package name="numpy" version="1.9">
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4 <repository changeset_revision="84e97f5cd3ab" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="nwalign" version="0.3.1">
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1
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://pypi.python.org/packages/source/n/nwalign/nwalign-0.3.1.tar.gz</action>
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10
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11 <action type="set_environment_for_install">
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12 <repository changeset_revision="84e97f5cd3ab" name="package_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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13 <package name="numpy" version="1.9" />
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14 </repository>
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15 </action>
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1
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16
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17
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18 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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19 <action type="shell_command">
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20 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&
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21 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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22 </action>
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23 <action type="set_environment">
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1
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24 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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1
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26 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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27 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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28 <environment_variable action="set_to" name="NWALIGN_ROOT_PATH">$INSTALL_DIR</environment_variable>
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29 </action>
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30 </actions>
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31 </install>
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32 <readme>Compiling nwalign requires a C compiler (typically gcc).</readme>
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33 </package>
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34 </tool_dependency>
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