Mercurial > repos > iuc > package_nwalign_0_3_1

comparison tool_dependencies.xml @ 1:82ffa9e32988 draft default tip

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author iuc
date Thu, 23 Apr 2015 10:10:39 -0400
parents 34b8e5cd74b6
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0:34b8e5cd74b6 1:82ffa9e32988
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.9"> 3 <package name="numpy" version="1.9">
4 <repository changeset_revision="84e97f5cd3ab" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="84e97f5cd3ab" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="nwalign" version="0.3.1"> 6 <package name="nwalign" version="0.3.1">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">https://pypi.python.org/packages/source/n/nwalign/nwalign-0.3.1.tar.gz</action> 9 <action type="download_by_url">https://pypi.python.org/packages/source/n/nwalign/nwalign-0.3.1.tar.gz</action>
10
10 <action type="set_environment_for_install"> 11 <action type="set_environment_for_install">
11 <repository changeset_revision="84e97f5cd3ab" name="package_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 12 <repository changeset_revision="84e97f5cd3ab" name="package_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="numpy" version="1.9" /> 13 <package name="numpy" version="1.9" />
13 </repository> 14 </repository>
14 </action> 15 </action>
16
17
15 <action type="make_directory">$INSTALL_DIR/lib/python</action> 18 <action type="make_directory">$INSTALL_DIR/lib/python</action>
16 <action type="shell_command"> 19 <action type="shell_command">
17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 20 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
18 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 21 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
19 </action> 22 </action>
20 <action type="set_environment"> 23 <action type="set_environment">
21 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 24 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
26 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
27 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
23 <environment_variable action="set_to" name="NWALIGN_ROOT_PATH">$INSTALL_DIR</environment_variable> 28 <environment_variable action="set_to" name="NWALIGN_ROOT_PATH">$INSTALL_DIR</environment_variable>
24 </action> 29 </action>
25 </actions> 30 </actions>
26 </install> 31 </install>
27 <readme>Compiling nwalign requires a C compiler (typically gcc).</readme> 32 <readme>Compiling nwalign requires a C compiler (typically gcc).</readme>