Mercurial > repos > iuc > package_picard_1_136_0

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
author iuc
date Thu, 16 Jul 2015 15:17:24 -0400
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64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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diff changeset
1 <?xml version="1.0"?>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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2 <tool_dependency>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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3 <package name="picard" version="1.136">
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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4 <install version="1.0">
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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5 <actions_group>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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6 <actions architecture="x86_64" os="linux">
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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7 <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.136/picard-tools-1.136.zip</action>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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8 <action type="move_directory_files">
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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9 <source_directory>.</source_directory>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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10 <destination_directory>$INSTALL_DIR</destination_directory>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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11 </action>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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12 </actions>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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13 <action type="set_environment">
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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14 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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15 </action>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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16 </actions_group>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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17 </install>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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18 <readme>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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19 This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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20 </readme>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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21 </package>
64053d6f7c00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/packages/package_picard_1_136/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
iuc
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22 </tool_dependency>