Mercurial > repos > iuc > package_pysam_0_7_7

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_pysam_0_7_7 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:46:47 -0400
parents b62538c8c664
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="ez_setup" version="0.9">
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4 <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
0a5141bdf9d0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_pysam_0_7_7 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
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5 </package>
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6 <package name="pysam" version="0.7.7">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.7.7.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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12 <package name="ez_setup" version="0.9" />
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13 </repository>
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14 </action>
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15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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16 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
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17 <action type="set_environment">
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18 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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19 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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20 <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable>
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21 <environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable>
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22 </action>
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23 </actions>
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24 </install>
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25 <readme>
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26 Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
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27 </readme>
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28 </package>
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29 </tool_dependency>