Mercurial > repos > iuc > package_pysam_0_7_7

comparison tool_dependencies.xml @ 1:0a5141bdf9d0 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_pysam_0_7_7 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:46:47 -0400
parents b62538c8c664
children
comparison
equal deleted inserted replaced
0:b62538c8c664 1:0a5141bdf9d0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="ez_setup" version="0.9">
4 <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
3 <package name="pysam" version="0.7.7"> 6 <package name="pysam" version="0.7.7">
4 <install version="1.0"> 7 <install version="1.0">
5 <actions> 8 <actions>
6 <action type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.7.7.tar.gz</action> 9 <action type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.7.7.tar.gz</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="ez_setup" version="0.9" />
13 </repository>
14 </action>
7 <action type="make_directory">$INSTALL_DIR/lib/python</action> 15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
8 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> 16 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
9 <action type="set_environment"> 17 <action type="set_environment">
10 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 18 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
11 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 19 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
12 <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable> 20 <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable>
21 <environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable>
13 </action> 22 </action>
14 </actions> 23 </actions>
15 </install> 24 </install>
16 <readme> 25 <readme>
17 Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH. 26 Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.