Mercurial > repos > iuc > package_python_2_7_deeptools_2_0_1

annotate tool_dependencies.xml @ 0:1fb61fa32733 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
author iuc
date Mon, 25 Jan 2016 20:09:53 -0500
parents
children 683473320997
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
2 <tool_dependency>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
3 <package name="numpy" version="1.9">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
4 <repository changeset_revision="794f5cf3bb5d" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
5 </package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
6 <package name="pybigwig" version="0.2.3">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
7 <repository changeset_revision="7e184186ae3e" name="package_python_2_7_10_pybigwig_0_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
8 </package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
9 <package name="matplotlib" version="1.4">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
10 <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
11 </package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
12 <package name="scipy" version="0.14">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
13 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
14 </package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
15 <package name="pysam" version="0.8.3">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
16 <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
17 </package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
18 <package name="bx-python" version="0.7.2">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
19 <repository changeset_revision="836bb9ad054a" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
20 </package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
21 <package name="python" version="2.7.10">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
22 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
23 </package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
24 <package name="deepTools" version="2.0.1">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
25 <install version="1.0">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
26 <actions>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
27 <action type="setup_python_environment">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
28 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
29 <package name="python" version="2.7.10" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
30 </repository>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
31 <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
32 <package name="pysam" version="0.8.3" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
33 </repository>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
34 <repository changeset_revision="794f5cf3bb5d" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
35 <package name="numpy" version="1.9" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
36 </repository>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
37 <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
38 <package name="matplotlib" version="1.4" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
39 </repository>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
40 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
41 <package name="scipy" version="0.14" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
42 </repository>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
43 <repository changeset_revision="836bb9ad054a" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
44 <package name="bx-python" version="0.7.2" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
45 </repository>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
46 <repository changeset_revision="7e184186ae3e" name="package_python_2_7_10_pybigwig_0_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
47 <package name="pybigwig" version="0.2.3" />
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
48 </repository>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
49 <package sha256sum="cc5590aaf34815ccb6290ee12b3d22e18c52ca5f54a5a30b94f1f3c1e75fc406">https://pypi.python.org/packages/source/d/deepTools/deepTools-2.0.1.tar.gz</package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
50 </action>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
51
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
52 <action type="set_environment">
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
53 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
54 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
55 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
56 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
57 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
58 <!-- libpng lib path -->
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
59 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
60 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
61 <!-- disable the config file of deepTools -->
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
62 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
63 </action>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
64 </actions>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
65 </install>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
66 <readme>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
67 Installation of deepTools from Fidel Ramirez.
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
68 https://github.com/fidelram/deepTools
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
69 </readme>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
70 </package>
1fb61fa32733 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0_1 commit 738c47de1e12e6a5799339812941bd4200cd6d96
iuc
parents:
diff changeset
71 </tool_dependency>