Mercurial > repos > iuc > package_python_2_7_gffutils_0_8

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_gffutils_0_8 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa
author iuc
date Wed, 02 Dec 2015 17:37:06 -0500
parents 79727e2f9dbf
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="2.7.10">
        <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="gffutils" version="0.8">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                   <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7.10" />
                   </repository>
                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
                    <package>https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz#md5=476881ef4012262dfc8adc645ee786c4</package>
                    <package>https://pypi.python.org/packages/source/a/argh/argh-0.26.1.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/a/argcomplete/argcomplete-0.8.9.tar.gz#md5=02861a1bd74943edc48741c06e125b6a</package>
                    <package>https://pypi.python.org/packages/source/s/simplejson/simplejson-3.7.3.tar.gz</package>
                    <package>https://github.com/mdshw5/pyfaidx/archive/v0.4.1.1.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/g/gffutils/gffutils-0.8.4rc1.tar.gz#md5=9d46b3dfac35ad812df2448f20c5e8cc</package>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="GFFUTILS_ROOT_DIR">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme> GFF and GTF file manipulation and interconversion.</readme>
    </package>
</tool_dependency>