Mercurial > repos > iuc > package_python_2_7_pybedtools_0_6_9

comparison tool_dependencies.xml @ 0:899ca0558676 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
author iuc
date Fri, 17 Jul 2015 14:28:43 -0400
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children 85fe6cd6aa72
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-1:000000000000 0:899ca0558676
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="tabix" version="0.2.6">
4 <repository changeset_revision="389d2376b60b" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="samtools" version="0.1.19">
7 <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="bedtools" version="2.22">
10 <repository changeset_revision="960f83563956" name="package_bedtools_2_22" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="cython" version="0.20.1">
13 <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="python" version="2.7">
16 <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="pybedtools" version="0.6.9">
19 <install version="1.0">
20 <actions>
21 <action type="setup_python_environment">
22 <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
23 <package name="python" version="2.7" />
24 </repository>
25 <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
26 <package name="cython" version="0.20.1" />
27 </repository>
28 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
29 <package>https://github.com/daler/pybedtools/archive/v0.6.9.tar.gz</package>
30 </action>
31 <action type="set_environment">
32 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
33 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
34 <environment_variable action="set_to" name="PYTHONPATH_PYBEDTOOLS">$INSTALL_DIR</environment_variable>
35 <environment_variable action="set_to" name="PATH_PYBEDTOOLS">$INSTALL_DIR/bin</environment_variable>
36 <environment_variable action="set_to" name="PYBEDTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
37 </action>
38 </actions>
39 </install>
40 <readme>Compiling pybedtools requires cython and the gcc compiler.
41 https://github.com/daler/pybedtools
42 </readme>
43 </package>
44 </tool_dependency>