Mercurial > repos > iuc > package_python_2_7_pybedtools_0_6_9
diff tool_dependencies.xml @ 0:899ca0558676 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
author | iuc |
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date | Fri, 17 Jul 2015 14:28:43 -0400 |
parents | |
children | 85fe6cd6aa72 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Jul 17 14:28:43 2015 -0400 @@ -0,0 +1,44 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="tabix" version="0.2.6"> + <repository changeset_revision="389d2376b60b" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="samtools" version="0.1.19"> + <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="bedtools" version="2.22"> + <repository changeset_revision="960f83563956" name="package_bedtools_2_22" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="cython" version="0.20.1"> + <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="python" version="2.7"> + <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="pybedtools" version="0.6.9"> + <install version="1.0"> + <actions> + <action type="setup_python_environment"> + <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="python" version="2.7" /> + </repository> + <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="cython" version="0.20.1" /> + </repository> + <!-- allow downloading and installing an Python package from https://pypi.org/ --> + <package>https://github.com/daler/pybedtools/archive/v0.6.9.tar.gz</package> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_PYBEDTOOLS">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="PATH_PYBEDTOOLS">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="PYBEDTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>Compiling pybedtools requires cython and the gcc compiler. + https://github.com/daler/pybedtools + </readme> + </package> +</tool_dependency>