comparison tool_dependencies.xml @ 1:6bac9a13b6b0 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
author iuc
date Wed, 04 Nov 2015 09:52:41 -0500
parents 31c9c5014965
children
comparison
equal deleted inserted replaced
0:31c9c5014965 1:6bac9a13b6b0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="R" version="3.1.1"> 3 <package name="R" version="3.1.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions_group> 5 <actions_group>
6 <actions architecture="x86_64" os="darwin">
7 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/R/R-3.1.1-Darwin-x86_64.tgz</action>
8 <action type="move_directory_files">
9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action>
12 <action type="shell_command">sh $INSTALL_DIR/darwin_post_install.sh $INSTALL_DIR</action>
13 </actions>
14 <actions architecture="x86_64" os="linux"> 6 <actions architecture="x86_64" os="linux">
15 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.1.tar.gz</action> 7 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.1.tar.gz</action>
16 <package name="readline" version="6.2"> 8 <package name="readline" version="6.2">
17 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" /> 9 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
18 </package> 10 </package>
19 <package name="libpng" version="1.6.7"> 11 <package name="libpng" version="1.6.7">
20 <repository name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" /> 12 <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
21 </package> 13 </package>
22 <package name="cairo" version="1.12.14"> 14 <package name="cairo" version="1.12.14">
23 <repository name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" /> 15 <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
24 </package> 16 </package>
25 <package name="pixman" version="0.32.4"> 17 <package name="pixman" version="0.32.4">
26 <repository name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" /> 18 <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
27 </package> 19 </package>
28 <package name="freetype" version="2.5.2"> 20 <package name="freetype" version="2.5.2">
29 <repository name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" /> 21 <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
30 </package> 22 </package>
31 <action type="set_environment"> 23 <action type="set_environment">
32 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable> 24 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable>
33 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable> 25 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>
34 </action> 26 </action>
35 <action type="set_environment_for_install"> 27 <action type="set_environment_for_install">
36 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" > 28 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
37 <package name="readline" version="6.2" /> 29 <package name="readline" version="6.2" />
38 </repository> 30 </repository>
39 <repository name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" > 31 <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
40 <package name="libpng" version="1.6.7" /> 32 <package name="libpng" version="1.6.7" />
41 </repository> 33 </repository>
42 <repository name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" > 34 <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
43 <package name="cairo" version="1.12.14" /> 35 <package name="cairo" version="1.12.14" />
44 </repository> 36 </repository>
45 <repository name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" > 37 <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
46 <package name="pixman" version="0.32.4" /> 38 <package name="pixman" version="0.32.4" />
47 </repository> 39 </repository>
48 <repository name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" > 40 <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
49 <package name="freetype" version="2.5.2" /> 41 <package name="freetype" version="2.5.2" />
50 </repository> 42 </repository>
51 </action> 43 </action>
52 <action type="shell_command"> 44 <action type="shell_command">
53 export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIB_PATH" &amp;&amp; 45 export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIB_PATH" &amp;&amp;