Mercurial > repos > iuc > package_raxml_8_2_4

diff tool_dependencies.xml @ 0:34be595fd2a9 draft default tip

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planemo upload commit 174be06d7c7e7789df16ea5d5068f20b21257a2f
author iuc
date Mon, 14 Nov 2016 14:03:20 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 14 14:03:20 2016 -0500
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="raxml" version="8.2.4">
+    <install version="1.0">
+      <actions>
+        <!-- Download source code -->
+        <action type="download_by_url" sha256sum="e9fa4b3fe790094d832a640edc2b448890237dca0012d509d95be4cd4ef3d83b" target_filename="standard-RAxML-8.2.4.tar.gz">https://github.com/stamatak/standard-RAxML/archive/v8.2.4.tar.gz</action>
+
+        <!-- Build raxml -->
+        <action type="shell_command">make -f Makefile.PTHREADS.gcc</action>
+        <action type="shell_command">make -f Makefile.gcc</action>
+        <!-- Install raxml -->
+        <action type="move_file">
+            <source>raxmlHPC-PTHREADS</source>
+            <destination>$INSTALL_DIR/bin</destination>
+        </action>
+        <action type="move_file">
+            <source>raxmlHPC</source>
+            <destination>$INSTALL_DIR/bin</destination>
+        </action>
+
+        <!-- Set environment for dependent repositories -->
+        <action type="set_environment">
+            <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>