Mercurial > repos > iuc > package_raxml_8_2_4

changeset 0:34be595fd2a9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 174be06d7c7e7789df16ea5d5068f20b21257a2f
author iuc
date Mon, 14 Nov 2016 14:03:20 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 29 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 14 14:03:20 2016 -0500
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="raxml" version="8.2.4">
+    <install version="1.0">
+      <actions>
+        <!-- Download source code -->
+        <action type="download_by_url" sha256sum="e9fa4b3fe790094d832a640edc2b448890237dca0012d509d95be4cd4ef3d83b" target_filename="standard-RAxML-8.2.4.tar.gz">https://github.com/stamatak/standard-RAxML/archive/v8.2.4.tar.gz</action>
+
+        <!-- Build raxml -->
+        <action type="shell_command">make -f Makefile.PTHREADS.gcc</action>
+        <action type="shell_command">make -f Makefile.gcc</action>
+        <!-- Install raxml -->
+        <action type="move_file">
+            <source>raxmlHPC-PTHREADS</source>
+            <destination>$INSTALL_DIR/bin</destination>
+        </action>
+        <action type="move_file">
+            <source>raxmlHPC</source>
+            <destination>$INSTALL_DIR/bin</destination>
+        </action>
+
+        <!-- Set environment for dependent repositories -->
+        <action type="set_environment">
+            <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>