Mercurial > repos > iuc > package_rnastructure_5_7
annotate tool_dependencies.xml @ 3:ecb56d964230 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_rnastructure_5_7/ commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
| author | iuc |
|---|---|
| date | Fri, 17 Jul 2015 11:08:11 -0400 |
| parents | 0458908fa099 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="rnastructure" version="5.7"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://depot.galaxyproject.org/package/source/RNAstructure-5.7.tgz</action> | |
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ecb56d964230
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_rnastructure_5_7/ commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
parents:
2
diff
changeset
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7 <action type="shell_command">sed -i.bak "s/version = 5\.6/version = 5.7/" "./src/ParseCommandLine.cpp"</action> |
| 2 | 8 <action type="shell_command">make all</action> |
| 1 | 9 <action type="move_directory_files"> |
| 10 <source_directory>.</source_directory> | |
| 11 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 12 </action> | |
| 0 | 13 <action type="set_environment"> |
| 14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/exe</environment_variable> | |
| 1 | 15 <environment_variable action="set_to" name="DATAPATH">$INSTALL_DIR/data_tables</environment_variable> |
| 0 | 16 </action> |
| 17 </actions> | |
| 18 </install> | |
| 19 <readme> | |
| 20 <![CDATA[ | |
| 21 RNAstructure is a complete package for RNA and DNA secondary structure | |
| 22 prediction and analysis. It includes algorithms for secondary structure | |
| 23 prediction, including facility to predict base pairing probabilities. It | |
| 24 also can be used to predict bimolecular structures and can predict the | |
| 25 equilibrium binding affinity of an oligonucleotide to a structured RNA | |
| 26 target. This is useful for siRNA design. It can also predict secondary | |
| 27 structures common to two, unaligned sequences, which is much more accurate | |
| 28 than single sequence secondary structure prediction. Finally, RNAstructure | |
| 29 can take a number of different types of experiment mapping data to constrain | |
| 30 or restrain structure prediction. These include chemical mapping, enzymatic | |
| 31 mapping, NMR, and SHAPE data. | |
| 32 ]]> | |
| 33 </readme> | |
| 34 </package> | |
| 35 </tool_dependency> |