Mercurial > repos > iuc > package_sailfish_0_7_6

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_7_6 commit da2c0649c11ed0d54c1de8d345be95882717bd1a-dirty
author iuc
date Fri, 16 Oct 2015 15:07:45 -0400
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04996d8b8587 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_7_6 commit da2c0649c11ed0d54c1de8d345be95882717bd1a-dirty
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="sailfish" version="0.7.6">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions architecture="x86_64" os="linux">
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7 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/releases/download/v0.7.6/SailfishBeta-0.7.6_Linux-x86-64.tar.gz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR</destination_directory>
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11 </action>
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12 </actions>
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13 <actions architecture="x86_64" os="darwin">
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14 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/releases/download/v0.7.6/SailfishBeta-0.7.6_OSX_10.10.tar.gz</action>
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15 <action type="move_directory_files">
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16 <source_directory>.</source_directory>
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17 <destination_directory>$INSTALL_DIR</destination_directory>
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18 </action>
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19 </actions>
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20 <actions>
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21 <!-- first action is always downloading -->
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22 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/archive/v0.7.6.tar.gz</action>
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23 <package name="boost" version="1.57">
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24 <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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25 </package>
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26 <package name="cmake" version="3.2.3">
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27 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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28 </package>
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29 <!-- populate the environment variables from the dependend repos -->
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30 <action type="set_environment_for_install">
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31 <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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32 <package name="boost" version="1.57" />
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33 </repository>
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34 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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35 <package name="cmake" version="3.2.3" />
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36 </repository>
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37 </action>
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38
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39 <!-- PYTHONPATH_NUMPY is set in the numpy package -->
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40 <action type="shell_command">
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41 mkdir build &amp;&amp;
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42 cd build &amp;&amp;
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43 cmake .. -DBOOST_ROOT=$BOOST_ROOT_DIR -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR</action>
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44 <action type="shell_command">cd ./build &amp;&amp; make </action>
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45 <action type="shell_command">cd ./build &amp;&amp; make install</action>
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46 <action type="set_environment">
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47 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable>
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48 </action>
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49 </actions>
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50 <action type="set_environment">
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51 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
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52 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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53 </action>
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54 </actions_group>
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55 </install>
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56 <readme>Compiling sailfish requires a C++11 compiler (usually gcc).</readme>
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57 </package>
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58 </tool_dependency>