Mercurial > repos > iuc > package_sailfish_0_7_6

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_7_6 commit da2c0649c11ed0d54c1de8d345be95882717bd1a-dirty
author iuc
date Fri, 16 Oct 2015 15:07:45 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="sailfish" version="0.7.6">
4 <install version="1.0">
5 <actions_group>
6 <actions architecture="x86_64" os="linux">
7 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/releases/download/v0.7.6/SailfishBeta-0.7.6_Linux-x86-64.tar.gz</action>
8 <action type="move_directory_files">
9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action>
12 </actions>
13 <actions architecture="x86_64" os="darwin">
14 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/releases/download/v0.7.6/SailfishBeta-0.7.6_OSX_10.10.tar.gz</action>
15 <action type="move_directory_files">
16 <source_directory>.</source_directory>
17 <destination_directory>$INSTALL_DIR</destination_directory>
18 </action>
19 </actions>
20 <actions>
21 <!-- first action is always downloading -->
22 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/archive/v0.7.6.tar.gz</action>
23 <package name="boost" version="1.57">
24 <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
25 </package>
26 <package name="cmake" version="3.2.3">
27 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
28 </package>
29 <!-- populate the environment variables from the dependend repos -->
30 <action type="set_environment_for_install">
31 <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
32 <package name="boost" version="1.57" />
33 </repository>
34 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
35 <package name="cmake" version="3.2.3" />
36 </repository>
37 </action>
38
39 <!-- PYTHONPATH_NUMPY is set in the numpy package -->
40 <action type="shell_command">
41 mkdir build &amp;&amp;
42 cd build &amp;&amp;
43 cmake .. -DBOOST_ROOT=$BOOST_ROOT_DIR -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR</action>
44 <action type="shell_command">cd ./build &amp;&amp; make </action>
45 <action type="shell_command">cd ./build &amp;&amp; make install</action>
46 <action type="set_environment">
47 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable>
48 </action>
49 </actions>
50 <action type="set_environment">
51 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
52 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
53 </action>
54 </actions_group>
55 </install>
56 <readme>Compiling sailfish requires a C++11 compiler (usually gcc).</readme>
57 </package>
58 </tool_dependency>